xcorr: AI & neuro

xcorr: AI & neuro

by Patrick Mineault

  • Good Research Code Handbook
  • Blogxcorr is the blog of Patrick J. Mineault, a PhD student in neuroscience at McGill University. I’m in the 3rd year of my PhD. I will be in the market for a Post-doc position around 2012/2013. I look like this: My email is patrick DOT mineault AT gmail DOT com. Here’s my CV. Studies I did my undergrad at McGill University in the Joint Honours in Physics and Mathematics program, completed in 2007. It involved both theoretical math (algebra, analysis, etc.) and physics (Lagrangian mechanics, GR, etc.). While most of my graduating class indeed ended up doing Physics or Math PhD’s, I ended up in the electrophysiology lab of Chris Pack. Which is great, because Chris is a brilliant, attentive advisor. Perhaps one of the reasons why I ended up in neuroscience is that while taking an elective class in neuroscience, a family member had an aneurysm in the right parietal lobe that left her with visual hemi-neglect. Seeing a person which shares a good deal of your genes fail at very basic visual consciousness is an unforgettable experience. I tried the classic “draw a flower” test and it was exactly like in Kandel & Schwartz, where only petals on…
  • Dimensionality reduction in neural data analysis
    Dimensionality reduction in neural data analysis

    It’s become commonplace to record from hundreds of neurons simultaneously. If past trends extrapolate, we might commonly record 10k neurons by 2030. What are we going to do with all this data? To deal with a 14-dimensional space, visualize a 3D space and say fourteen to yourself very loudly. Everyone does it. Geoffrey Hinton Neural […]

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    July 26, 2021
  • My stack for research ML projects
    My stack for research ML projects

    For the past few months, I’ve been working on a machine learning research project, which I just submitted to NeurIPS [update: it was accepted as a spotlight! Preprint here]. The scale is, all things considered, fairly small: the output limited to one paper and a handful of figures. Yet, I still needed to distribute the […]

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    June 9, 2021
  • Dynamic scientific visualizations in the browser for Python users
    Dynamic scientific visualizations in the browser for Python users

    As a scientist, interacting with data allows you to gain new insight into the phenomena you’re studying. If you read the New York Times, the D3 docs or you browse distill, you’ll see impressive browser-based visualizations – interactive storytelling that not only accurately represent data but bring your attention to surprising aspects of it. Making […]

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    June 2, 2021
  • Accelerating progress in brain recording tech
    Accelerating progress in brain recording tech

    In Stevenson and Kording (2011), the authors estimated that every 7.4 years, the number of neurons we can record with doubles. Think of it as Moore’s law for brain recordings. Since then, Stevenson has updated the estimate, which now stands at 6 years. Could it be that progress itself is accelerating? Matteo Carandini raised a […]

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    April 27, 2021
  • Is early vision like a convolutional neural net?
    Is early vision like a convolutional neural net?

    Early convolutional neural net (CNNs) architectures like the Neocognitron, LeNet and HMAX were inspired by the brain. But how much like the brain are modern CNNs? I made a pretty strong claim on Twitter a few weeks ago that the early visual processing is nothing like a CNN: In typical Twitter fashion, my statement was […]

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    April 16, 2021
  • Building Neuromatch Academy
    Building Neuromatch Academy

    Neuromatch Academy 2020 is a three-week online summer school in computational neuroscience that took place in July of 2020. We created interactive notebooks covering all aspects of computational neuroscience – from signals and models of spikes to machine learning and behaviour. We hired close to 200 TAs to teach this material to 1,700 students from […]

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    March 25, 2021
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