xcorr: AI & neuro

xcorr: AI & neuro

by Patrick Mineault

  • Good Research Code Handbook
  • Blogxcorr is the blog of Patrick J. Mineault, a PhD student in neuroscience at McGill University. I’m in the 3rd year of my PhD. I will be in the market for a Post-doc position around 2012/2013. I look like this: My email is patrick DOT mineault AT gmail DOT com. Here’s my CV. Studies I did my undergrad at McGill University in the Joint Honours in Physics and Mathematics program, completed in 2007. It involved both theoretical math (algebra, analysis, etc.) and physics (Lagrangian mechanics, GR, etc.). While most of my graduating class indeed ended up doing Physics or Math PhD’s, I ended up in the electrophysiology lab of Chris Pack. Which is great, because Chris is a brilliant, attentive advisor. Perhaps one of the reasons why I ended up in neuroscience is that while taking an elective class in neuroscience, a family member had an aneurysm in the right parietal lobe that left her with visual hemi-neglect. Seeing a person which shares a good deal of your genes fail at very basic visual consciousness is an unforgettable experience. I tried the classic “draw a flower” test and it was exactly like in Kandel & Schwartz, where only petals on…
  • A case study in PsychToolbox

    Although PsychToolbox is very easy to get up and running, implementing a full experiment takes time. PsychToolbox is a toolbox, not a framework; there are no constraints on how you should organize your programming. If your programming is well-organized, it’s easy to modify your experiments, understand how a program works after you haven’t touched it […]

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    April 21, 2008
  • Flash lag effect demo

    Neato!

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    March 14, 2008
  • Binning in matlab: a one-liner

    Sometimes a stimulus or response in an experiment is sampled at a uselessly high frequency. For example, a 3d (x, y and t axes) stimulus for a psychophysical reverse correlation experiment might include one noise sample per time frame. If a trial lasts a second, that can mean 100 samples or more, and if the […]

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    March 13, 2008
  • Another PsychToolbox tutorial

    Another PsychToolbox tutorial, this one from Keith Schneider at Rochester U.  Included are code for a binocular rivalry task with anaglyph glasses support, a flickering checkerboard fMRI stimulus for retinotopy mapping and random dot fields. If I have time I’ll package these into .m files and add to the PsychToolbox code.

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    March 11, 2008
  • Course sites at Berkeley, McGill

    Have been interested lately in finding good course sites for self-study on computational neuroscience. Found this through Curtis Baker: Neural Computation 298 at Berkeley, by Olshausen (of Field and Olshausen 1996 fame). Very interesting material there, good sample code, challenging assignments, assigned readings, the whole works. I’m also mentioning in the same breath the site […]

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    March 6, 2008
  • Using command line programs in matlab: disable screen saver during an experiment

    PsychToolbox doesn’t have a function to enable or disable the Windows screensaver, and the screensaver popping seems to crash PsychToolbox. Matlab allows you to run dos programs from the command line, so a quick way to solve this issue is to grab the command line app FlipSS, put it in your experiment directory, and then […]

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    March 4, 2008
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