xcorr: AI & neuro

xcorr: AI & neuro

by Patrick Mineault

  • Good Research Code Handbook
  • Substack
  • Aboutxcorr is the blog of Patrick J. Mineault.
  • Rotated histogram in Matlab

    I wanted to draw some marginal histograms of a 2d distribution in Matlab. There is a function called scatterhist that does this but I couldn’t integrate it with the other subplots I wanted in this figure. Turns out a rotated histogram is as easy as changing the plot’s virtual camera position by setting the axis’

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    April 1, 2011
  • Taking the convolution of several images in one shot in Matlab

    I wanted to take the convolution M different images (stored in an M x n x n) matrix with the same kernel in the Fourier domain, but I couldn’t figure out how to run fft2 on the second and third dimension of that matrix (computing a bunch of 2D FFTs in a single matlab call).

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    March 13, 2011
  • Obscure Matlab feature #0: Debug on error

    If you have a long running function that you just wrote and need to debug, type this in the Matlab command window: dbstop if error This will cause the debugger to kick in as soon as a Matlab error is thrown, so you can trace the variables in your function which are erased from memory

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    March 13, 2011
  • Snow Dots project for psychophysics, neurophysiology in Matlab

    There’s a new project for coordinating large scale psychophysics and neurophysiology in Matlab called Snow Dots. It uses PsychToolbox as a presentation layer and builds a framework around it to automate experimental flow, do GUIs, move data around, etc. It’s a little too Java-ish for my tastes (I’m a lightweight, convention over configuration kind of

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    March 10, 2011
  • Forwarding spikes in a Plexon system to some other computer over IP

    We have a 96-channel MAP Plexon system in the lab, which we use to record from an array implanted in V4. Originally we ran open-loop experiments (mapping stimuli and such), but soon we decided to perform closed loop experiments. Recording at 10kHz per channel sucks up a lot of CPU and thus the presentation software

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    March 9, 2011
  • Boosting in Matlab: a package

    I just posted a package to do boosting in generalized linear and additive models (GLM and GAM) on Matlab Central. Boosting is method for fitting GAMs, which are models composed of nonlinear functions (“learners” or “smoothers”) added together to form an internal response which is then transduced into an observed response by a nonlinearity followed

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    January 26, 2011
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