Load pickle files in Matlab

Updated March 2020

It’s easy enough to load .mat files in Python via the scipy.io.loadmat function. But what about loading .pickle files into Matlab? That’s easy enough by calling a system command to save the data in the .mat format which Matlab can load, like so:

function [a] = loadpickle(filename)
  if ~exist(filename,'file')
    error('%s is not a file',filename);
  end
  outname = [tempname() '.mat'];
  pyscript = ['import pickle;import sys;import scipy.io;file=open("' filename '", "rb");dat=pickle.load(file);file.close();scipy.io.savemat("' outname '.dat")'];
system(['python -c "' pyscript '"']);
a = load(outname);
end

In newer versions of Matlab, there’s an even simpler method thanks to the direct Python support in Matlab. Assuming you’ve set up Matlab to use the right Python version, you can simply use:

% Filename is the name of the file.
fid = py.open(filename,'rb');
data = py.pickle.load(fid);

Thanks to Tim R for this second method.

2 comments

  1. When I try this I seem to be getting this error – File “/path-to-python-packages/scipy/io/matlab/mio5.py”, line 857, in put_variables
    for name, var in mdict.items():
    AttributeError: ‘list’ object has no attribute ‘items’
    I am using scipy 0.13 – Any Idea what could be going wrong here ?

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