Calling R from Matlab – flat file communication

In the last post I showed how to fit a Bayesian hierarchical model in R to estimate experimental parameters. Our main data analysis pipeline uses Matlab, and we’d like to integrate these two environments for the purpose of analysis. The example involved JAGS, which does have a direct Matlab interface in addition to the more common R one, but more … More Calling R from Matlab – flat file communication

Scientific Python in the browser: ipython notebook

By far the most popular post on this blog is a review of several Python integrated development environments (IDEs) geared toward science. Coming from a Matlab background, it’s natural to search for something Matlab-like to replace it – an IDE with integrated editor, code execution, plotting, benchmarking, file management, etc. An increasingly attractive alternative is the IPython Notebook. The ipython Notebook … More Scientific Python in the browser: ipython notebook